WebMay 25, 2024 · A Bayesian inference (BI) phylogenetic tree of cyanophage S-B68 and other virus were built after alignment of their sequences using the CIPRES Science Gateway … WebFeb 1, 2024 · All BEAST analyses were performed on the computer cluster CIPRES Science Gateway 3.3 (Miller et al., 2015; www.phylo.org). Tracer was used to assess graphically the convergence of runs, and to check the ESS for all parameters (indicated by ESS above 200, following the BEAST manual). For each analysis, we conducted two …
v33 CIPRES - phylo
WebJun 4, 2015 · Phylogenetic analyses were performed with ML and BI methods available on the CIPRES Science Gateway 3.3 . ML analysis was conducted with RAxML-HPC2 on XSEDE 8.0.24 using GTRGAMMAI model, and 1000 bootstraps (BS) were used to estimate the node reliability. Bayesian analysis was carried out using MrBayes 3.2.2 []. After … WebSep 18, 2024 · Molecular clock analyses were performed using the program BEAST using the Cyberinfrastructure for Phylogenetic Research (CIPRES) Science Gateway v. 3.3 server . The CpREV model was chosen as the best-fitting amino acid substitution model, based on ProtTest analysis ( 41 ). oxford university founded in
Pathogens Free Full-Text Characterization of Pseudofusicoccum ...
WebThe CIPRES Science Gateway v. 3.3 online server was used for RAxML and the tree was visualized with the Interactive Tree of Life (iToL) visualization tool. WebMar 18, 2024 · The final tree was visualized and edited using FigTree v.1.4.3 3. To assess the possible ancestral distribution regions of Parnassia, we performed an ... Pfeiffer, W., and Schwartz, T. (2010). “Creating the CIPRES Science Gateway for inference of large phylogenetic trees,” in Proceedings of the 2010 Gateway Computing Environments ... WebApr 11, 2024 · HIGHLIGHTS who: Zhan-Bo Liu from the Guizhou Institute of Technology, China Southwest Forestry University, China have published the Article: A contribution to the genus Steccherinum (Steccherinaceae, Polyporales): Introducing two new … A contribution to the genus steccherinum (steccherinaceae, polyporales): introducing two new species … jeff williamson